SMCHD1 expression based on
COAD : Colon adenocarcinoma
Comparison Statistical significance Normal-vs-Primary 5.30131494258512E-13
Pan-cancer view
Methylation
Survival
Protein Exp (CPTAC)
Correlated genes
DepMap
COAD : Colon adenocarcinoma Note
Cancer stage information is not available for 12 samples.
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Comparison Statistical significance
Normal-vs-Stage1
1.12129999996213E-06
Normal-vs-Stage2
2.1497026381212E-11
Normal-vs-Stage3
2.16490048110529E-10
Normal-vs-Stage4
2.267099999953E-07
Stage1-vs-Stage2
3.701200E-01
Stage1-vs-Stage3
7.124600E-01
Stage1-vs-Stage4
4.472400E-01
Stage2-vs-Stage3
4.929600E-01
Stage2-vs-Stage4
8.894400E-01
Stage3-vs-Stage4
5.674400E-01
Pan-cancer view
Methylation
Survival
Protein Exp (CPTAC)
Correlated genes
DepMap
COAD : Colon adenocarcinoma Note
Patient race information is not available for 26 samples. One sample from American Indian patient is not considered in the above plot.
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Comparison Statistical significance
Normal-vs-Caucasian
1.74089631599372E-11
Normal-vs-AfricanAmerican
2.99189995001115E-09
Normal-vs-Asian
2.956500E-03
Caucasian-vs-AfricanAmerican
5.833200E-01
Caucasian-vs-Asian
6.366000E-01
AfricanAmerican-vs-Asian
5.027200E-01
Pan-cancer view
Methylation
Survival
Protein Exp (CPTAC)
Correlated genes
DepMap
COAD : Colon adenocarcinoma Note
Patient gender information is not available for 3 samples.
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Comparison Statistical significance
Normal-vs-Male
1.56419988073253E-10
Normal-vs-Female
2.54418708323101E-12
Male-vs-Female
8.209000E-01
Pan-cancer view
Methylation
Survival
Protein Exp (CPTAC)
Correlated genes
DepMap
COAD : Colon adenocarcinoma Note
Patient BMI information is not available for 75 samples.
Descriptions Normal weight BMI greater than equal to 18.5 and BMI less than 25
Extereme weight
BMI greater than equal to 25 and BMI less than 30 Obese BMI greater than equal to 30 and BMI less than 40
Extreme Obese
BMI greater than 40
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Comparison Statistical significance
Normal-vs-Normal_Weight
3.42060046953918E-10
Normal-vs-Extreme_Weight
5.94539972809116E-10
Normal-vs-Obese
8.2229000053502E-08
Normal-vs-Extreme_Obese
2.20189999999842E-05
Normal_Weight-vs-Extreme_Weight
7.179000E-01
Normal_Weight-vs-Obese
8.066400E-01
Normal_Weight-vs-Extreme_Obese
4.211600E-01
Extreme_Weight-vs-Obese
5.822000E-01
Extreme_Weight-vs-Extreme_Obese
5.786200E-01
Obese-vs-Extreme_Obese
4.194000E-01
Pan-cancer view
Methylation
Survival
Protein Exp (CPTAC)
Correlated genes
DepMap
COAD : Colon adenocarcinoma Note
Patient age information is not available for 3 samples.
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Comparison Statistical significance
Normal-vs-Age(21-40Yrs)
3.157800E-01
Normal-vs-Age(41-60Yrs)
1.66089364483923E-13
Normal-vs-Age(61-80Yrs)
2.92110780009125E-12
Normal-vs-Age(81-100Yrs)
4.45000000000029E-05
Age(21-40Yrs)-vs-Age(41-60Yrs)
6.035600E-02
Age(21-40Yrs)-vs-Age(61-80Yrs)
8.726300E-02
Age(21-40Yrs)-vs-Age(81-100Yrs)
1.571250E-01
Age(41-60Yrs)-vs-Age(61-80Yrs)
4.721600E-01
Age(41-60Yrs)-vs-Age(81-100Yrs)
3.018800E-01
Age(61-80Yrs)-vs-Age(81-100Yrs)
4.953800E-01
Pan-cancer view
Methylation
Survival
Protein Exp (CPTAC)
Correlated genes
DepMap
COAD : Colon adenocarcinoma Note
Tumor histology information is not available for 6 samples.
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Comparison Statistical significance
Normal-vs-Adenocarcinoma
1.66533453693773E-15
Normal-vs-Mucinous-adenocarcinoma
1.240060E-03
Adenocarcinoma-vs-Mucinous-adenocarcinoma
1.584170E-02
Pan-cancer view
Methylation
Survival
Protein Exp (CPTAC)
Correlated genes
DepMap
COAD : Colon adenocarcinoma Note
Nodal metastais status is not available for 3 samples.
pathologic_N descriptions N0 No regional lymph node metastasis
N1 Metastases in 1 to 3 axillary lymph nodes N2 Metastases in 4 to 9 axillary lymph nodes
N3 Metastases in 10 or more axillary lymph nodes
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Comparison Statistical significance
Normal-vs-N0
8.29170065941298E-12
Normal-vs-N1
1.70885527950304E-12
Normal-vs-N2
2.54820000000766E-06
N0-vs-N1
2.027800E-01
N0-vs-N2
2.505600E-01
N1-vs-N2
5.956100E-02
Pan-cancer view
Methylation
Survival
Protein Exp (CPTAC)
Correlated genes
DepMap
COAD : Colon adenocarcinoma Note
Whole exome sequencing data is not available for 4 samples.
TP53 mutation status is obtained from TCGA whole exome sequencing data. We downloaded Mutation Annotation Format (MAF) files (derived from VarScan2) from Genomic Data Commons portal. The sample with/without TP53 mutation were matched with RNA-seq data
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Comparison Statistical significance
Normal-vs-TP53-Mutant
1.82076576038526E-14
Normal-vs-TP53-NonMutant
1.26039999548411E-08
TP53-Mutant-vs-TP53-NonMutant
3.663700E-02
Pan-cancer view
Methylation
Survival
Protein Exp (CPTAC)
Correlated genes
DepMap
